PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00208g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 143aa    MW: 16057.9 Da    PI: 4.3894
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00208g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.77.3e-093556829
                              HHHHHHHHHHHHHHHHHHHHHH CS
                    SRF-TF  8 nrqvtfskRrngilKKAeELSv 29
                              +r+vtfskR  g++KKA+ L +
  Peinf101Scf00208g00013.1 35 RRHVTFSKRHLGLFKKASKLRI 56
                              9****************98866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.11E-63462IPR002100Transcription factor, MADS-box
PfamPF003192.3E-73556IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.1523563IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDYCLGGLSS TFDITCSAVF YIPAGGDDVD GGGARRHVTF SKRHLGLFKK ASKLRINAEI  60
SISNNQYYSK ICGELEAEKQ TKEIIEESNI VNDNNDGVFW WDEESNDDVG VEELEEFVTA  120
LEEFKKCKAI KLVSSFGFPW KEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602824.15e-24PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4B2N73e-21K4B2N7_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.19e-21(Solanum lycopersicum)